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Wednesday, July 27 • 2:30pm - 2:50pm
R Markdown + RStudio Connect + R Shiny: A Recipe for Automated Data Processing, Error Logging, and Process Monitoring

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R is more than just a tool for data analysis– it can help streamline and automate processes, including managing and monitoring data pipelines. This presentation highlights how R Markdown, RStudio Connect, and R Shiny can be utilized to automate data processing, error logging, and process monitoring. By the end of the presentation, attendees will better understand: (1) how RStudio Connect paired with R Markdown can be used to automate data processing, (2) that packages such as blastula and loggit can be used within R Markdown documents scheduled on RStudio Connect to email users when an error is encountered during data processing and log those errors, and (3) that the resulting logs can be fed to a Shiny app to enhance process monitoring.

avatar for Kolbi Parrish

Kolbi Parrish

California Dept. Public Health + UCSF
Kolbi Parrish is an Informatics Specialist working at the California Department of Public Health (CDPH) through the University of California, San Francisco. She has worked in public health for over 10 years, has a Master’s degree in Industrial and Organizational Psychology, and... Read More →
avatar for Andy Pham

Andy Pham

UCSF + California Dept. Public Health
Andy is a clinical informatics specialist working at the California Department of Public Health Data Processing and Informatics section, where he works on building disease surveillance data pipelines for gathering, processing and reporting. Andy has a Master's in Health Informatics... Read More →

Wednesday July 27, 2022 2:30pm - 2:50pm EDT
4. National Harbor 10+11